J5_8VOO_001

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

8VOO|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|D|C|36
8VOO|1|D|U|37
8VOO|1|D|G|38
8VOO|1|D|G|39
*
8VOO|1|D|C|403
8VOO|1|D|G|404
8VOO|1|D|U|405
8VOO|1|D|G|406
*
8VOO|1|D|C|436
8VOO|1|D|U|437
8VOO|1|D|U|438
8VOO|1|D|U|439
8VOO|1|D|C|440
*
8VOO|1|D|G|497
8VOO|1|D|A|498
8VOO|1|D|A|499
8VOO|1|D|G|500
*
8VOO|1|D|C|545
8VOO|1|D|A|546
8VOO|1|D|A|547
8VOO|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12