J5_8VOO_007

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8VOO|1|a|U|1758, 8VOO|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|a|G|1674
8VOO|1|a|C|1675
8VOO|1|a|A|1676
8VOO|1|a|A|1677
8VOO|1|a|A|1678
8VOO|1|a|A|1679
8VOO|1|a|U|1680
8VOO|1|a|G|1681
8VOO|1|a|G|1682
*
8VOO|1|a|C|1706
8VOO|1|a|G|1707
*
8VOO|1|a|U|1751
8VOO|1|a|C|1752
*
8VOO|1|a|G|1756
8VOO|1|a|A|1757
8VOO|1|a|U|1758
8VOO|1|a|A|1759
8VOO|1|a|C|1760
8VOO|1|a|C|1761
8VOO|1|a|A|1762
8VOO|1|a|G|1763
8VOO|1|a|C|1764
*
8VOO|1|a|G|1988
8VOO|1|a|G|1989
8VOO|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19