J5_8VOQ_002

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

8VOQ|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOQ|1|D|C|36
8VOQ|1|D|U|37
8VOQ|1|D|G|38
8VOQ|1|D|G|39
*
8VOQ|1|D|C|403
8VOQ|1|D|G|404
8VOQ|1|D|U|405
8VOQ|1|D|G|406
*
8VOQ|1|D|C|436
8VOQ|1|D|U|437
8VOQ|1|D|U|438
8VOQ|1|D|U|439
8VOQ|1|D|C|440
8VOQ|1|D|A|441
8VOQ|1|D|G|442
*
8VOQ|1|D|C|492
8VOQ|1|D|A|493
8VOQ|1|D|G|494
8VOQ|1|D|A|495
8VOQ|1|D|A|496
8VOQ|1|D|G|497
8VOQ|1|D|A|498
8VOQ|1|D|A|499
8VOQ|1|D|G|500
*
8VOQ|1|D|C|545
8VOQ|1|D|A|546
8VOQ|1|D|A|547
8VOQ|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12