J5_8VOS_002

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

8VOS|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|D|C|36
8VOS|1|D|U|37
8VOS|1|D|G|38
8VOS|1|D|G|39
*
8VOS|1|D|C|403
8VOS|1|D|G|404
8VOS|1|D|U|405
8VOS|1|D|G|406
*
8VOS|1|D|C|436
8VOS|1|D|U|437
8VOS|1|D|U|438
8VOS|1|D|U|439
8VOS|1|D|C|440
8VOS|1|D|A|441
8VOS|1|D|G|442
*
8VOS|1|D|C|492
8VOS|1|D|A|493
8VOS|1|D|G|494
8VOS|1|D|A|495
8VOS|1|D|A|496
8VOS|1|D|G|497
8VOS|1|D|A|498
8VOS|1|D|A|499
8VOS|1|D|G|500
*
8VOS|1|D|C|545
8VOS|1|D|A|546
8VOS|1|D|A|547
8VOS|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain R

30S ribosomal protein S12