J5_8VOS_003

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8VOS|1|D|A|109, 8VOS|1|D|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|D|C|58
8VOS|1|D|A|59
8VOS|1|D|A|60
8VOS|1|D|G|61
*
8VOS|1|D|C|106
8VOS|1|D|G|107
8VOS|1|D|G|108
8VOS|1|D|A|109
8VOS|1|D|C|110
8VOS|1|D|G|111
8VOS|1|D|G|112
8VOS|1|D|G|113
*
8VOS|1|D|C|314
8VOS|1|D|A|315
8VOS|1|D|C|316
*
8VOS|1|D|G|337
8VOS|1|D|A|338
8VOS|1|D|C|339
*
8VOS|1|D|G|350
8VOS|1|D|G|351
8VOS|1|D|C|352
8VOS|1|D|A|353
8VOS|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20

Chain U

Small ribosomal subunit protein bS16

Chain t

Large ribosomal subunit protein uL14