J5_8VOS_007

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8VOS|1|a|U|1758, 8VOS|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|a|G|1674
8VOS|1|a|C|1675
8VOS|1|a|A|1676
8VOS|1|a|A|1677
8VOS|1|a|A|1678
8VOS|1|a|A|1679
8VOS|1|a|U|1680
8VOS|1|a|G|1681
8VOS|1|a|G|1682
*
8VOS|1|a|C|1706
8VOS|1|a|G|1707
*
8VOS|1|a|U|1751
8VOS|1|a|C|1752
*
8VOS|1|a|G|1756
8VOS|1|a|A|1757
8VOS|1|a|U|1758
8VOS|1|a|A|1759
8VOS|1|a|C|1760
8VOS|1|a|C|1761
8VOS|1|a|A|1762
8VOS|1|a|G|1763
8VOS|1|a|C|1764
*
8VOS|1|a|G|1988
8VOS|1|a|G|1989
8VOS|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

Large ribosomal subunit protein uL14

Chain y

Large ribosomal subunit protein bL19