J5_8VPK_001

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CCG*UCAC*GGG

Length

24 nucleotides

Bulged bases

8VPK|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|C|44
8VPK|1|A|G|45
8VPK|1|A|A|46
8VPK|1|A|U|47
8VPK|1|A|G|48
8VPK|1|A|A|49
8VPK|1|A|A|50
8VPK|1|A|G|51
*
8VPK|1|A|C|113
8VPK|1|A|G|114
8VPK|1|A|A|115
8VPK|1|A|A|116
8VPK|1|A|U|117
8VPK|1|A|G|118
*
8VPK|1|A|C|126
8VPK|1|A|C|127
8VPK|1|A|G|128
*
8VPK|1|A|U|146
8VPK|1|A|C|147
8VPK|1|A|A|148
8VPK|1|A|C|149
*
8VPK|1|A|G|175
8VPK|1|A|G|176
8VPK|1|A|G|177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34