J5_8VPK_006

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCU

Length

35 nucleotides

Bulged bases

8VPK|1|A|A|2672, 8VPK|1|A|U|2809, 8VPK|1|A|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|A|2281
8VPK|1|A|A|2282
8VPK|1|A|A|2283
8VPK|1|A|A|2284
8VPK|1|A|G|2285
8VPK|1|A|A|2286
8VPK|1|A|C|2287
8VPK|1|A|C|2288
*
8VPK|1|A|G|2670
8VPK|1|A|G|2671
8VPK|1|A|A|2672
8VPK|1|A|U|2673
8VPK|1|A|A|2674
8VPK|1|A|A|2675
8VPK|1|A|C|2676
8VPK|1|A|A|2677
*
8VPK|1|A|U|2724
8VPK|1|A|C|2725
8VPK|1|A|G|2726
8VPK|1|A|A|2727
8VPK|1|A|U|2728
8VPK|1|A|G|2729
8VPK|1|A|U|2730
*
8VPK|1|A|G|2807
8VPK|1|A|U|2808
8VPK|1|A|U|2809
8VPK|1|A|U|2810
8VPK|1|A|A|2811
8VPK|1|A|G|2812
*
8VPK|1|A|C|2830
8VPK|1|A|G|2831
8VPK|1|A|G|2832
8VPK|1|A|U|2833
8VPK|1|A|C|2834
8VPK|1|A|U|2835

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15

Chain N

Large ribosomal subunit protein uL16

Chain T

50S Ribosomal Protein L22

Chain b

50S ribosomal protein L32