J5_8VRL_001

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8VRL|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VRL_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1194

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VRL|1|A|C|44
8VRL|1|A|G|45
8VRL|1|A|A|46
8VRL|1|A|U|47
8VRL|1|A|G|48
8VRL|1|A|A|49
8VRL|1|A|A|50
8VRL|1|A|G|51
*
8VRL|1|A|C|113
8VRL|1|A|G|114
8VRL|1|A|A|115
8VRL|1|A|A|116
8VRL|1|A|U|117
8VRL|1|A|G|118
*
8VRL|1|A|C|127
8VRL|1|A|G|128
*
8VRL|1|A|C|147
8VRL|1|A|A|148
8VRL|1|A|C|149
*
8VRL|1|A|G|175
8VRL|1|A|G|176
8VRL|1|A|G|177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain d

50S ribosomal protein L34