J5_8VRL_003
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGAGUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8VRL|1|A|U|1370
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VRL_003 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1288
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8VRL|1|A|C|676
8VRL|1|A|G|677
8VRL|1|A|A|678
8VRL|1|A|G|679
8VRL|1|A|U|680
8VRL|1|A|C|681
*
8VRL|1|A|G|783
8VRL|1|A|G|784
8VRL|1|A|A|785
8VRL|1|A|C|786
*
8VRL|1|A|G|924
8VRL|1|A|U|925
8VRL|1|A|U|926
8VRL|1|A|C|927
*
8VRL|1|A|G|1310
8VRL|1|A|C|1311
*
8VRL|1|A|G|1365
8VRL|1|A|A|1366
8VRL|1|A|G|1367
8VRL|1|A|A|1368
8VRL|1|A|A|1369
8VRL|1|A|U|1370
8VRL|1|A|G|1371
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain M
- 50S ribosomal protein L15
- Chain R
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein bL21
- Chain e
- 50S ribosomal protein L35
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