J5_8VRL_004

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|C|694
8VRL|1|A|G|695
8VRL|1|A|A|696
8VRL|1|A|G|697
*
8VRL|1|A|C|718
8VRL|1|A|G|719
8VRL|1|A|C|720
8VRL|1|A|A|721
8VRL|1|A|G|722
*
8VRL|1|A|C|729
8VRL|1|A|G|730
8VRL|1|A|A|731
8VRL|1|A|G|732
*
8VRL|1|A|C|744
8VRL|1|A|G|745
8VRL|1|A|U|746
8VRL|1|A|A|747
8VRL|1|A|U|748
8VRL|1|A|C|749
*
8VRL|1|A|G|766
8VRL|1|A|U|767
8VRL|1|A|G|768
8VRL|1|A|U|769
8VRL|1|A|A|770
8VRL|1|A|G|771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35