J5_8VSA_003

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAAG*CGGACGGG*CAC*GAC*GGCAGC

Length

25 nucleotides

Bulged bases

8VSA|1|16S|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|16S|G|57
8VSA|1|16S|C|58
8VSA|1|16S|A|59
8VSA|1|16S|A|60
8VSA|1|16S|G|61
*
8VSA|1|16S|C|106
8VSA|1|16S|G|107
8VSA|1|16S|G|108
8VSA|1|16S|A|109
8VSA|1|16S|C|110
8VSA|1|16S|G|111
8VSA|1|16S|G|112
8VSA|1|16S|G|113
*
8VSA|1|16S|C|314
8VSA|1|16S|A|315
8VSA|1|16S|C|316
*
8VSA|1|16S|G|337
8VSA|1|16S|A|338
8VSA|1|16S|C|339
*
8VSA|1|16S|G|350
8VSA|1|16S|G|351
8VSA|1|16S|C|352
8VSA|1|16S|A|353
8VSA|1|16S|G|354
8VSA|1|16S|C|355

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain L14

50S ribosomal protein L14

Chain L19

50S ribosomal protein L19

Chain S16

30S ribosomal protein S16

Chain S20

30S ribosomal protein S20