3D structure

PDB id
8VSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
8VSA|1|23S|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8VSA_004 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.1087
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8VSA|1|23S|C|47
8VSA|1|23S|G|48
8VSA|1|23S|A|49
8VSA|1|23S|U|50
8VSA|1|23S|G|51
8VSA|1|23S|A|52
8VSA|1|23S|A|53
8VSA|1|23S|G|54
*
8VSA|1|23S|C|116
8VSA|1|23S|G|117
8VSA|1|23S|A|118
8VSA|1|23S|A|119
8VSA|1|23S|U|120
8VSA|1|23S|G|121
*
8VSA|1|23S|C|130
8VSA|1|23S|A|131
*
8VSA|1|23S|U|148
8VSA|1|23S|A|149
8VSA|1|23S|U|150
*
8VSA|1|23S|A|176
8VSA|1|23S|G|177
8VSA|1|23S|G|178

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L34
50S ribosomal protein L34

Coloring options:


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