J5_8VSA_004

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8VSA|1|23S|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VSA_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1087

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VSA|1|23S|C|47
8VSA|1|23S|G|48
8VSA|1|23S|A|49
8VSA|1|23S|U|50
8VSA|1|23S|G|51
8VSA|1|23S|A|52
8VSA|1|23S|A|53
8VSA|1|23S|G|54
*
8VSA|1|23S|C|116
8VSA|1|23S|G|117
8VSA|1|23S|A|118
8VSA|1|23S|A|119
8VSA|1|23S|U|120
8VSA|1|23S|G|121
*
8VSA|1|23S|C|130
8VSA|1|23S|A|131
*
8VSA|1|23S|U|148
8VSA|1|23S|A|149
8VSA|1|23S|U|150
*
8VSA|1|23S|A|176
8VSA|1|23S|G|177
8VSA|1|23S|G|178

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L34

50S ribosomal protein L34