J5_8VSA_007

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGUGAGUCGACC*GAAA*UACU*AAUCGUAC

Length

33 nucleotides

Bulged bases

8VSA|1|23S|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|23S|G|1310
8VSA|1|23S|G|1311
8VSA|1|23S|U|1312
8VSA|1|23S|U|1313
8VSA|1|23S|C|1314
*
8VSA|1|23S|G|1338
8VSA|1|23S|G|1339
8VSA|1|23S|U|1340
8VSA|1|23S|G|1341
8VSA|1|23S|A|1342
8VSA|1|23S|G|1343
8VSA|1|23S|U|1344
8VSA|1|23S|C|1345
8VSA|1|23S|G|1346
8VSA|1|23S|A|1347
8VSA|1|23S|C|1348
8VSA|1|23S|C|1349
*
8VSA|1|23S|G|1382
8VSA|1|23S|A|1383
8VSA|1|23S|A|1384
8VSA|1|23S|A|1385
*
8VSA|1|23S|U|1402
8VSA|1|23S|A|1403
8VSA|1|23S|C|1404
8VSA|1|23S|U|1405
*
8VSA|1|23S|A|1597
8VSA|1|23S|A|1598
8VSA|1|23S|U|1599
8VSA|1|23S|C|1600
8VSA|1|23S|G|1601
8VSA|1|23S|U|1602
8VSA|1|23S|A|1603
8VSA|1|23S|C|1604

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23

Chain L34

50S ribosomal protein L34