J5_8VSA_009
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8VSA|1|23S|A|2062, 8VSA|1|23S|A|2448, 8VSA|1|23S|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VSA|1|23S|G|2057
8VSA|1|23S|A|2058
8VSA|1|23S|A|2059
8VSA|1|23S|A|2060
8VSA|1|23S|G|2061
8VSA|1|23S|A|2062
8VSA|1|23S|C|2063
8VSA|1|23S|C|2064
*
8VSA|1|23S|G|2446
8VSA|1|23S|G|2447
8VSA|1|23S|A|2448
8VSA|1|23S|U|2449
8VSA|1|23S|A|2450
8VSA|1|23S|A|2451
8VSA|1|23S|C|2452
8VSA|1|23S|A|2453
*
8VSA|1|23S|U|2500
8VSA|1|23S|C|2501
8VSA|1|23S|G|2502
8VSA|1|23S|A|2503
8VSA|1|23S|U|2504
8VSA|1|23S|G|2505
8VSA|1|23S|U|2506
8VSA|1|23S|C|2507
*
8VSA|1|23S|G|2582
8VSA|1|23S|G|2583
8VSA|1|23S|U|2584
8VSA|1|23S|U|2585
8VSA|1|23S|U|2586
8VSA|1|23S|A|2587
8VSA|1|23S|G|2588
*
8VSA|1|23S|C|2606
8VSA|1|23S|G|2607
8VSA|1|23S|G|2608
8VSA|1|23S|U|2609
8VSA|1|23S|C|2610
8VSA|1|23S|C|2611
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain ATRN
- Transfer RNA; tRNA
- Chain L02
- 50S ribosomal protein L2
- Chain L03
- 50S ribosomal protein L3
- Chain L04
- 50S ribosomal protein L4
- Chain L15
- 50S ribosomal protein L15
- Chain L16
- 50S ribosomal protein L16
- Chain L22
- 50S ribosomal protein L22
- Chain L32
- 50S ribosomal protein L32
- Chain TMRN
- Transfer-messenger RNA; tmRNA
Coloring options: