J5_8VTV_006

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

8VTV|1|1A|A|2448, 8VTV|1|1A|U|2449, 8VTV|1|1A|U|2609

QA status

Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTV|1|1A|A|2057
8VTV|1|1A|A|2058
8VTV|1|1A|A|2059
8VTV|1|1A|A|2060
8VTV|1|1A|G|2061
8VTV|1|1A|A|2062
8VTV|1|1A|C|2063
8VTV|1|1A|C|2064
*
8VTV|1|1A|G|2446
8VTV|1|1A|G|2447
8VTV|1|1A|A|2448
8VTV|1|1A|U|2449
8VTV|1|1A|A|2450
8VTV|1|1A|A|2451
8VTV|1|1A|C|2452
8VTV|1|1A|A|2453
*
8VTV|1|1A|U|2500
8VTV|1|1A|C|2501
8VTV|1|1A|G|2502
8VTV|1|1A|2MA|2503
8VTV|1|1A|U|2504
8VTV|1|1A|G|2505
8VTV|1|1A|U|2506
8VTV|1|1A|C|2507
*
8VTV|1|1A|G|2582
8VTV|1|1A|G|2583
8VTV|1|1A|U|2584
8VTV|1|1A|U|2585
8VTV|1|1A|C|2586
8VTV|1|1A|A|2587
8VTV|1|1A|G|2588
*
8VTV|1|1A|C|2606
8VTV|1|1A|G|2607
8VTV|1|1A|G|2608
8VTV|1|1A|U|2609
8VTV|1|1A|C|2610
8VTV|1|1A|U|2611

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 15

50S ribosomal protein L32

Chain 1D

50S ribosomal protein L2

Chain 1E

50S ribosomal protein L3

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15

Chain 1Q

50S ribosomal protein L16

Chain 1W

50S ribosomal protein L22

Chain 1w

Transfer RNA; tRNA

Chain 1x

Transfer RNA; tRNA