J5_8VTV_014

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTV|1|2A|C|601
8VTV|1|2A|G|602
8VTV|1|2A|A|603
8VTV|1|2A|G|604
*
8VTV|1|2A|C|624
8VTV|1|2A|G|625
8VTV|1|2A|U|626
8VTV|1|2A|A|627
8VTV|1|2A|G|628
*
8VTV|1|2A|C|635
8VTV|1|2A|G|636
8VTV|1|2A|A|637
8VTV|1|2A|G|638
*
8VTV|1|2A|C|650
8VTV|1|2A|G|651
8VTV|1|2A|C|652
8VTV|1|2A|A|652|||A
8VTV|1|2A|A|652|||B
8VTV|1|2A|G|652|||C
*
8VTV|1|2A|C|652|||V
8VTV|1|2A|A|653
8VTV|1|2A|A|654
8VTV|1|2A|A|655
8VTV|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15