J5_8VTX_020

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8VTX|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTX|1|2A|C|601
8VTX|1|2A|G|602
8VTX|1|2A|A|603
8VTX|1|2A|G|604
*
8VTX|1|2A|C|624
8VTX|1|2A|G|625
8VTX|1|2A|U|626
8VTX|1|2A|A|627
8VTX|1|2A|G|628
*
8VTX|1|2A|C|635
8VTX|1|2A|G|636
8VTX|1|2A|A|637
8VTX|1|2A|G|638
*
8VTX|1|2A|C|650
8VTX|1|2A|G|651
8VTX|1|2A|C|652
8VTX|1|2A|A|652|||A
8VTX|1|2A|A|652|||B
8VTX|1|2A|G|652|||C
*
8VTX|1|2A|C|652|||V
8VTX|1|2A|A|653
8VTX|1|2A|A|654
8VTX|1|2A|A|655
8VTX|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15