J5_8VUP_003
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGACUU*AGACCCG*CUGGUUC*GC*GCGAAUG
- Length
- 29 nucleotides
- Bulged bases
- 8VUP|1|1|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VUP|1|1|C|584
8VUP|1|1|G|585
8VUP|1|1|A|586
8VUP|1|1|C|587
8VUP|1|1|U|588
8VUP|1|1|U|589
*
8VUP|1|1|A|668
8VUP|1|1|G|669
8VUP|1|1|A|670
8VUP|1|1|C|671
8VUP|1|1|C|672
8VUP|1|1|C|673
8VUP|1|1|G|674
*
8VUP|1|1|C|806
8VUP|1|1|U|807
8VUP|1|1|G|808
8VUP|1|1|G|809
8VUP|1|1|U|810
8VUP|1|1|U|811
8VUP|1|1|C|812
*
8VUP|1|1|G|1195
8VUP|1|1|C|1196
*
8VUP|1|1|G|1250
8VUP|1|1|C|1251
8VUP|1|1|G|1252
8VUP|1|1|A|1253
8VUP|1|1|A|1254
8VUP|1|1|U|1255
8VUP|1|1|G|1256
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Ribosomal protein L21
- Chain e
- 50S ribosomal protein L35
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