J5_8VUP_005
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8VUP|1|1|A|2062, 8VUP|1|1|A|2448, 8VUP|1|1|U|2506, 8VUP|1|1|U|2585, 8VUP|1|1|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VUP|1|1|G|2057
8VUP|1|1|A|2058
8VUP|1|1|A|2059
8VUP|1|1|A|2060
8VUP|1|1|G|2061
8VUP|1|1|A|2062
8VUP|1|1|C|2063
8VUP|1|1|C|2064
*
8VUP|1|1|G|2446
8VUP|1|1|G|2447
8VUP|1|1|A|2448
8VUP|1|1|U|2449
8VUP|1|1|A|2450
8VUP|1|1|A|2451
8VUP|1|1|C|2452
8VUP|1|1|A|2453
*
8VUP|1|1|U|2500
8VUP|1|1|C|2501
8VUP|1|1|G|2502
8VUP|1|1|A|2503
8VUP|1|1|U|2504
8VUP|1|1|G|2505
8VUP|1|1|U|2506
8VUP|1|1|C|2507
*
8VUP|1|1|G|2582
8VUP|1|1|G|2583
8VUP|1|1|U|2584
8VUP|1|1|U|2585
8VUP|1|1|U|2586
8VUP|1|1|A|2587
8VUP|1|1|G|2588
*
8VUP|1|1|C|2606
8VUP|1|1|G|2607
8VUP|1|1|G|2608
8VUP|1|1|U|2609
8VUP|1|1|C|2610
8VUP|1|1|C|2611
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L3
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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