J5_8VUP_007

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*CGUG*CUUUCAGC*GCAGAAGAAG*CAAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|C|36
8VUP|1|2|U|37
8VUP|1|2|G|38
8VUP|1|2|G|39
*
8VUP|1|2|C|403
8VUP|1|2|G|404
8VUP|1|2|U|405
8VUP|1|2|G|406
*
8VUP|1|2|C|436
8VUP|1|2|U|437
8VUP|1|2|U|438
8VUP|1|2|U|439
8VUP|1|2|C|440
8VUP|1|2|A|441
8VUP|1|2|G|442
8VUP|1|2|C|443
*
8VUP|1|2|G|491
8VUP|1|2|C|492
8VUP|1|2|A|493
8VUP|1|2|G|494
8VUP|1|2|A|495
8VUP|1|2|A|496
8VUP|1|2|G|497
8VUP|1|2|A|498
8VUP|1|2|A|499
8VUP|1|2|G|500
*
8VUP|1|2|C|545
8VUP|1|2|A|546
8VUP|1|2|A|547
8VUP|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12