J5_8VUP_008

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GACU*AGGCAG

Length

25 nucleotides

Bulged bases

8VUP|1|2|A|60, 8VUP|1|2|A|109, 8VUP|1|2|C|352, 8VUP|1|2|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|C|58
8VUP|1|2|A|59
8VUP|1|2|A|60
8VUP|1|2|G|61
*
8VUP|1|2|C|106
8VUP|1|2|G|107
8VUP|1|2|G|108
8VUP|1|2|A|109
8VUP|1|2|C|110
8VUP|1|2|G|111
8VUP|1|2|G|112
8VUP|1|2|G|113
*
8VUP|1|2|C|314
8VUP|1|2|A|315
8VUP|1|2|C|316
*
8VUP|1|2|G|337
8VUP|1|2|A|338
8VUP|1|2|C|339
8VUP|1|2|U|340
*
8VUP|1|2|A|349
8VUP|1|2|G|350
8VUP|1|2|G|351
8VUP|1|2|C|352
8VUP|1|2|A|353
8VUP|1|2|G|354

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20