J5_8VV4_008

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VV4|1|2|C|36
8VV4|1|2|U|37
8VV4|1|2|G|38
8VV4|1|2|G|39
*
8VV4|1|2|C|403
8VV4|1|2|G|404
8VV4|1|2|U|405
8VV4|1|2|G|406
*
8VV4|1|2|C|436
8VV4|1|2|U|437
8VV4|1|2|U|438
8VV4|1|2|U|439
8VV4|1|2|C|440
8VV4|1|2|A|441
8VV4|1|2|G|442
*
8VV4|1|2|C|492
8VV4|1|2|A|493
8VV4|1|2|G|494
8VV4|1|2|A|495
8VV4|1|2|A|496
8VV4|1|2|G|497
8VV4|1|2|A|498
8VV4|1|2|A|499
8VV4|1|2|G|500
*
8VV4|1|2|C|545
8VV4|1|2|A|546
8VV4|1|2|A|547
8VV4|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12