J5_8VVP_003
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8VVP|1|WA|G|3622, 8VVP|1|WA|G|3627
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVP|1|WA|G|2857
8VVP|1|WA|C|2858
8VVP|1|WA|A|2859
8VVP|1|WA|A|2860
8VVP|1|WA|G|2861
8VVP|1|WA|C|2862
8VVP|1|WA|C|2863
8VVP|1|WA|G|2864
8VVP|1|WA|G|2865
*
8VVP|1|WA|U|2889
8VVP|1|WA|G|2890
*
8VVP|1|WA|U|3615
8VVP|1|WA|G|3616
*
8VVP|1|WA|C|3620
8VVP|1|WA|G|3621
8VVP|1|WA|G|3622
8VVP|1|WA|A|3623
8VVP|1|WA|C|3624
8VVP|1|WA|C|3625
8VVP|1|WA|A|3626
8VVP|1|WA|G|3627
8VVP|1|WA|G|3628
*
8VVP|1|WA|C|3837
8VVP|1|WA|A|3838
8VVP|1|WA|C|3839
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL2
- Chain Q
- eL19
- Chain U
- L23
- Chain V
- uL24
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: