J5_8VVP_007

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|ZA|C|30
8VVP|1|ZA|U|31
8VVP|1|ZA|U|32
8VVP|1|ZA|G|33
8VVP|1|ZA|U|34
*
8VVP|1|ZA|A|521
8VVP|1|ZA|A|522
8VVP|1|ZA|A|523
8VVP|1|ZA|U|524
8VVP|1|ZA|A|525
8VVP|1|ZA|A|526
8VVP|1|ZA|C|527
*
8VVP|1|ZA|G|558
8VVP|1|ZA|G|559
8VVP|1|ZA|A|560
8VVP|1|ZA|A|561
8VVP|1|ZA|U|562
8VVP|1|ZA|G|563
8VVP|1|ZA|A|564
8VVP|1|ZA|G|565
*
8VVP|1|ZA|C|585
8VVP|1|ZA|G|586
8VVP|1|ZA|A|587
8VVP|1|ZA|G|588
8VVP|1|ZA|G|589
8VVP|1|ZA|A|590
8VVP|1|ZA|U|591
8VVP|1|ZA|C|592
8VVP|1|ZA|C|593
8VVP|1|ZA|A|594
8VVP|1|ZA|U|595
*
8VVP|1|ZA|A|641
8VVP|1|ZA|U|642
8VVP|1|ZA|A|643
8VVP|1|ZA|G|644

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9

Chain XB

S23