J5_8VVP_009

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8VVP|1|ZA|G|126, 8VVP|1|ZA|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|ZA|G|123
8VVP|1|ZA|U|124
8VVP|1|ZA|C|125
8VVP|1|ZA|G|126
8VVP|1|ZA|C|127
8VVP|1|ZA|U|128
8VVP|1|ZA|C|129
*
8VVP|1|ZA|G|183
8VVP|1|ZA|G|184
8VVP|1|ZA|G|185
*
8VVP|1|ZA|U|214
8VVP|1|ZA|G|215
*
8VVP|1|ZA|C|310
8VVP|1|ZA|C|311
8VVP|1|ZA|G|312
*
8VVP|1|ZA|C|337
8VVP|1|ZA|G|338
8VVP|1|ZA|A|339
8VVP|1|ZA|C|340
8VVP|1|ZA|C|341

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain GB

eS6

Chain IB

S8