J5_8VVR_004
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8VVR|1|WA|A|3910, 8VVR|1|WA|A|4396, 8VVR|1|WA|U|4397, 8VVR|1|WA|U|4452, 8VVR|1|WA|G|4453, 8VVR|1|WA|U|4557, 8VVR|1|WA|U|4558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVR|1|WA|A|3905
8VVR|1|WA|G|3906
8VVR|1|WA|A|3907
8VVR|1|WA|A|3908
8VVR|1|WA|G|3909
8VVR|1|WA|A|3910
8VVR|1|WA|C|3911
8VVR|1|WA|C|3912
*
8VVR|1|WA|G|4394
8VVR|1|WA|G|4395
8VVR|1|WA|A|4396
8VVR|1|WA|U|4397
8VVR|1|WA|A|4398
8VVR|1|WA|A|4399
8VVR|1|WA|C|4400
8VVR|1|WA|U|4401
8VVR|1|WA|G|4402
*
8VVR|1|WA|C|4446
8VVR|1|WA|U|4447
8VVR|1|WA|U|4448
8VVR|1|WA|C|4449
8VVR|1|WA|G|4450
8VVR|1|WA|A|4451
8VVR|1|WA|U|4452
8VVR|1|WA|G|4453
8VVR|1|WA|U|4454
8VVR|1|WA|C|4455
*
8VVR|1|WA|G|4530
8VVR|1|WA|G|4531
8VVR|1|WA|U|4532
8VVR|1|WA|U|4533
8VVR|1|WA|U|4534
8VVR|1|WA|A|4535
8VVR|1|WA|G|4536
*
8VVR|1|WA|U|4554
8VVR|1|WA|A|4555
8VVR|1|WA|G|4556
8VVR|1|WA|U|4557
8VVR|1|WA|U|4558
8VVR|1|WA|U|4559
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain AA
- L29
- Chain B
- uL3
- Chain C
- uL4
- Chain IC
- peptide
- Chain SA
- Transfer RNA; tRNA
- Chain Z
- uL15
Coloring options: