J5_8VVR_006

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

8VVR|1|ZA|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVR|1|ZA|C|30
8VVR|1|ZA|U|31
8VVR|1|ZA|U|32
8VVR|1|ZA|G|33
8VVR|1|ZA|U|34
*
8VVR|1|ZA|A|521
8VVR|1|ZA|A|522
8VVR|1|ZA|A|523
8VVR|1|ZA|U|524
8VVR|1|ZA|A|525
8VVR|1|ZA|A|526
8VVR|1|ZA|C|527
*
8VVR|1|ZA|G|558
8VVR|1|ZA|G|559
8VVR|1|ZA|A|560
8VVR|1|ZA|A|561
8VVR|1|ZA|U|562
8VVR|1|ZA|G|563
*
8VVR|1|ZA|C|592
8VVR|1|ZA|C|593
8VVR|1|ZA|A|594
8VVR|1|ZA|U|595
*
8VVR|1|ZA|A|641
8VVR|1|ZA|U|642
8VVR|1|ZA|A|643
8VVR|1|ZA|G|644

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain HC

eukaryotic elongation factor 1A

Chain JB

S9

Chain XB

S23