J5_8VVS_007

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|ZA|C|30
8VVS|1|ZA|U|31
8VVS|1|ZA|U|32
8VVS|1|ZA|G|33
8VVS|1|ZA|U|34
*
8VVS|1|ZA|A|521
8VVS|1|ZA|A|522
8VVS|1|ZA|A|523
8VVS|1|ZA|U|524
8VVS|1|ZA|A|525
8VVS|1|ZA|A|526
8VVS|1|ZA|C|527
*
8VVS|1|ZA|G|558
8VVS|1|ZA|G|559
8VVS|1|ZA|A|560
8VVS|1|ZA|A|561
8VVS|1|ZA|U|562
8VVS|1|ZA|G|563
8VVS|1|ZA|A|564
8VVS|1|ZA|G|565
*
8VVS|1|ZA|C|585
8VVS|1|ZA|G|586
8VVS|1|ZA|A|587
8VVS|1|ZA|G|588
8VVS|1|ZA|G|589
8VVS|1|ZA|A|590
8VVS|1|ZA|U|591
8VVS|1|ZA|C|592
8VVS|1|ZA|C|593
8VVS|1|ZA|A|594
8VVS|1|ZA|U|595
*
8VVS|1|ZA|A|641
8VVS|1|ZA|U|642
8VVS|1|ZA|A|643
8VVS|1|ZA|G|644

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain HC

eukaryotic elongation factor 1 A

Chain JB

S9

Chain XB

S23