J5_8VVS_009

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8VVS|1|ZA|G|126, 8VVS|1|ZA|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|ZA|G|123
8VVS|1|ZA|U|124
8VVS|1|ZA|C|125
8VVS|1|ZA|G|126
8VVS|1|ZA|C|127
8VVS|1|ZA|U|128
8VVS|1|ZA|C|129
*
8VVS|1|ZA|G|183
8VVS|1|ZA|G|184
8VVS|1|ZA|G|185
*
8VVS|1|ZA|U|214
8VVS|1|ZA|G|215
*
8VVS|1|ZA|C|310
8VVS|1|ZA|C|311
8VVS|1|ZA|G|312
*
8VVS|1|ZA|C|337
8VVS|1|ZA|G|338
8VVS|1|ZA|A|339
8VVS|1|ZA|C|340
8VVS|1|ZA|C|341

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain GB

eS6

Chain IB

S8