J5_8VWQ_008

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VWQ|1|2|C|36
8VWQ|1|2|U|37
8VWQ|1|2|G|38
8VWQ|1|2|G|39
*
8VWQ|1|2|C|403
8VWQ|1|2|G|404
8VWQ|1|2|U|405
8VWQ|1|2|G|406
*
8VWQ|1|2|C|436
8VWQ|1|2|U|437
8VWQ|1|2|U|438
8VWQ|1|2|U|439
8VWQ|1|2|C|440
8VWQ|1|2|A|441
8VWQ|1|2|G|442
*
8VWQ|1|2|C|492
8VWQ|1|2|A|493
8VWQ|1|2|G|494
8VWQ|1|2|A|495
8VWQ|1|2|A|496
8VWQ|1|2|G|497
8VWQ|1|2|A|498
8VWQ|1|2|A|499
8VWQ|1|2|G|500
*
8VWQ|1|2|C|545
8VWQ|1|2|A|546
8VWQ|1|2|A|547
8VWQ|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12