J5_8W2N_009

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8W2N|1|2|A|109, 8W2N|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8W2N|1|2|C|58
8W2N|1|2|A|59
8W2N|1|2|A|60
8W2N|1|2|G|61
*
8W2N|1|2|C|106
8W2N|1|2|G|107
8W2N|1|2|G|108
8W2N|1|2|A|109
8W2N|1|2|C|110
8W2N|1|2|G|111
8W2N|1|2|G|112
8W2N|1|2|G|113
*
8W2N|1|2|C|314
8W2N|1|2|A|315
8W2N|1|2|C|316
*
8W2N|1|2|G|337
8W2N|1|2|A|338
8W2N|1|2|C|339
*
8W2N|1|2|G|350
8W2N|1|2|G|351
8W2N|1|2|C|352
8W2N|1|2|A|353
8W2N|1|2|G|354

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20