J5_8W51_005

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGA(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8W51|1|A|A|2062, 8W51|1|A|A|2448, 8W51|1|A|U|2585, 8W51|1|A|U|2609

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8W51|1|A|G|2057
8W51|1|A|A|2058
8W51|1|A|A|2059
8W51|1|A|A|2060
8W51|1|A|G|2061
8W51|1|A|A|2062
8W51|1|A|C|2063
8W51|1|A|C|2064
*
8W51|1|A|G|2446
8W51|1|A|G|2447
8W51|1|A|A|2448
8W51|1|A|U|2449
8W51|1|A|A|2450
8W51|1|A|A|2451
8W51|1|A|C|2452
8W51|1|A|A|2453
*
8W51|1|A|U|2500
8W51|1|A|C|2501
8W51|1|A|G|2502
8W51|1|A|A|2503
8W51|1|A|PSU|2504
8W51|1|A|G|2505
8W51|1|A|U|2506
8W51|1|A|C|2507
*
8W51|1|A|G|2582
8W51|1|A|G|2583
8W51|1|A|U|2584
8W51|1|A|U|2585
8W51|1|A|U|2586
8W51|1|A|A|2587
8W51|1|A|G|2588
*
8W51|1|A|C|2606
8W51|1|A|G|2607
8W51|1|A|G|2608
8W51|1|A|U|2609
8W51|1|A|C|2610
8W51|1|A|C|2611

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22