J5_8WHX_005

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WHX|1|A|C|694
8WHX|1|A|G|695
8WHX|1|A|A|696
8WHX|1|A|G|697
*
8WHX|1|A|C|718
8WHX|1|A|G|719
8WHX|1|A|C|720
8WHX|1|A|A|721
8WHX|1|A|G|722
*
8WHX|1|A|C|729
8WHX|1|A|G|730
8WHX|1|A|A|731
8WHX|1|A|G|732
*
8WHX|1|A|C|744
8WHX|1|A|G|745
8WHX|1|A|U|746
8WHX|1|A|A|747
8WHX|1|A|U|748
8WHX|1|A|C|749
*
8WHX|1|A|G|766
8WHX|1|A|U|767
8WHX|1|A|G|768
8WHX|1|A|U|769
8WHX|1|A|A|770
8WHX|1|A|G|771

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15