J5_8WI7_002

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8WI7|1|A|U|318, 8WI7|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WI7|1|A|C|269
8WI7|1|A|U|270
8WI7|1|A|A|271
8WI7|1|A|A|272
8WI7|1|A|A|273
8WI7|1|A|C|274
*
8WI7|1|A|G|312
8WI7|1|A|G|313
8WI7|1|A|G|314
8WI7|1|A|U|315
8WI7|1|A|U|316
8WI7|1|A|G|317
8WI7|1|A|U|318
8WI7|1|A|G|319
*
8WI7|1|A|C|457
8WI7|1|A|G|458
8WI7|1|A|A|459
8WI7|1|A|G|460
8WI7|1|A|U|461
8WI7|1|A|A|462
8WI7|1|A|G|463
*
8WI7|1|A|U|487
8WI7|1|A|G|488
8WI7|1|A|A|489
8WI7|1|A|A|490
8WI7|1|A|U|491
8WI7|1|A|C|492
8WI7|1|A|U|493
8WI7|1|A|G|494
*
8WI7|1|A|U|509
8WI7|1|A|A|510
8WI7|1|A|A|511
8WI7|1|A|G|512

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain J

50S ribosomal protein L9