J5_8WIB_005

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WIB|1|A|C|694
8WIB|1|A|G|695
8WIB|1|A|A|696
8WIB|1|A|G|697
*
8WIB|1|A|C|718
8WIB|1|A|G|719
8WIB|1|A|C|720
8WIB|1|A|A|721
8WIB|1|A|G|722
*
8WIB|1|A|C|729
8WIB|1|A|G|730
8WIB|1|A|A|731
8WIB|1|A|G|732
*
8WIB|1|A|C|744
8WIB|1|A|G|745
8WIB|1|A|U|746
8WIB|1|A|A|747
8WIB|1|A|U|748
8WIB|1|A|C|749
*
8WIB|1|A|G|766
8WIB|1|A|U|767
8WIB|1|A|G|768
8WIB|1|A|U|769
8WIB|1|A|A|770
8WIB|1|A|G|771

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15