J5_8WIC_002

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8WIC|1|A|U|318, 8WIC|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WIC|1|A|C|269
8WIC|1|A|U|270
8WIC|1|A|A|271
8WIC|1|A|A|272
8WIC|1|A|A|273
8WIC|1|A|C|274
*
8WIC|1|A|G|312
8WIC|1|A|G|313
8WIC|1|A|G|314
8WIC|1|A|U|315
8WIC|1|A|U|316
8WIC|1|A|G|317
8WIC|1|A|U|318
8WIC|1|A|G|319
*
8WIC|1|A|C|457
8WIC|1|A|G|458
8WIC|1|A|A|459
8WIC|1|A|G|460
8WIC|1|A|U|461
8WIC|1|A|A|462
8WIC|1|A|G|463
*
8WIC|1|A|U|487
8WIC|1|A|G|488
8WIC|1|A|A|489
8WIC|1|A|A|490
8WIC|1|A|U|491
8WIC|1|A|C|492
8WIC|1|A|U|493
8WIC|1|A|G|494
*
8WIC|1|A|U|509
8WIC|1|A|A|510
8WIC|1|A|A|511
8WIC|1|A|G|512

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain J

50S ribosomal protein L9