J5_8WIC_005

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WIC|1|A|C|694
8WIC|1|A|G|695
8WIC|1|A|A|696
8WIC|1|A|G|697
*
8WIC|1|A|C|718
8WIC|1|A|G|719
8WIC|1|A|C|720
8WIC|1|A|A|721
8WIC|1|A|G|722
*
8WIC|1|A|C|729
8WIC|1|A|G|730
8WIC|1|A|A|731
8WIC|1|A|G|732
*
8WIC|1|A|C|744
8WIC|1|A|G|745
8WIC|1|A|U|746
8WIC|1|A|A|747
8WIC|1|A|U|748
8WIC|1|A|C|749
*
8WIC|1|A|G|766
8WIC|1|A|U|767
8WIC|1|A|G|768
8WIC|1|A|U|769
8WIC|1|A|A|770
8WIC|1|A|G|771

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15