J5_8XSX_008
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUCGCUC*GGG*UG*CCG*CGACC
- Length
- 20 nucleotides
- Bulged bases
- 8XSX|1|S2|G|126, 8XSX|1|S2|C|127
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XSX|1|S2|G|123
8XSX|1|S2|U|124
8XSX|1|S2|C|125
8XSX|1|S2|G|126
8XSX|1|S2|C|127
8XSX|1|S2|U|128
8XSX|1|S2|C|129
*
8XSX|1|S2|G|183
8XSX|1|S2|G|184
8XSX|1|S2|G|185
*
8XSX|1|S2|U|214
8XSX|1|S2|G|215
*
8XSX|1|S2|C|310
8XSX|1|S2|C|311
8XSX|1|S2|G|312
*
8XSX|1|S2|C|337
8XSX|1|S2|G|338
8XSX|1|S2|A|339
8XSX|1|S2|C|340
8XSX|1|S2|C|341
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: