J5_8XSY_005
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8XSY|1|L5|G|3922, 8XSY|1|L5|A|4376, 8XSY|1|L5|G|4377, 8XSY|1|L5|A|4378, 8XSY|1|L5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8XSY_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3071
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8XSY|1|L5|U|3920
8XSY|1|L5|U|3921
8XSY|1|L5|G|3922
8XSY|1|L5|A|3923
*
8XSY|1|L5|U|4188
8XSY|1|L5|U|4189
8XSY|1|L5|U|4190
8XSY|1|L5|G|4191
*
8XSY|1|L5|C|4204
8XSY|1|L5|A|4205
*
8XSY|1|L5|U|4227
8XSY|1|L5|G|4228
*
8XSY|1|L5|C|4375
8XSY|1|L5|A|4376
8XSY|1|L5|G|4377
8XSY|1|L5|A|4378
8XSY|1|L5|A|4379
8XSY|1|L5|A|4380
8XSY|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
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