J5_8XSZ_009
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCGCUCGCUCCUCUCCCACUU*AUGCCGACGGGC*GUG*CCG*CGA
- Length
- 42 nucleotides
- Bulged bases
- 8XSZ|1|S2|C|127, 8XSZ|1|S2|C|131, 8XSZ|1|S2|U|132, 8XSZ|1|S2|C|133, 8XSZ|1|S2|C|134, 8XSZ|1|S2|U|135, 8XSZ|1|S2|C|136, 8XSZ|1|S2|U|137, 8XSZ|1|S2|C|138, 8XSZ|1|S2|C|139, 8XSZ|1|S2|C|142, 8XSZ|1|S2|U|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XSZ|1|S2|U|124
8XSZ|1|S2|C|125
8XSZ|1|S2|G|126
8XSZ|1|S2|C|127
8XSZ|1|S2|U|128
8XSZ|1|S2|C|129
8XSZ|1|S2|G|130
8XSZ|1|S2|C|131
8XSZ|1|S2|U|132
8XSZ|1|S2|C|133
8XSZ|1|S2|C|134
8XSZ|1|S2|U|135
8XSZ|1|S2|C|136
8XSZ|1|S2|U|137
8XSZ|1|S2|C|138
8XSZ|1|S2|C|139
8XSZ|1|S2|C|140
8XSZ|1|S2|A|141
8XSZ|1|S2|C|142
8XSZ|1|S2|U|143
8XSZ|1|S2|U|144
*
8XSZ|1|S2|A|175
8XSZ|1|S2|U|176
8XSZ|1|S2|G|177
8XSZ|1|S2|C|178
8XSZ|1|S2|C|179
8XSZ|1|S2|G|180
8XSZ|1|S2|A|181
8XSZ|1|S2|C|182
8XSZ|1|S2|G|183
8XSZ|1|S2|G|184
8XSZ|1|S2|G|185
8XSZ|1|S2|C|186
*
8XSZ|1|S2|G|213
8XSZ|1|S2|U|214
8XSZ|1|S2|G|215
*
8XSZ|1|S2|C|310
8XSZ|1|S2|C|311
8XSZ|1|S2|G|312
*
8XSZ|1|S2|C|337
8XSZ|1|S2|G|338
8XSZ|1|S2|A|339
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: