J5_8XT1_002
3D structure
- PDB id
- 8XT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAGAAAUAAC*GACCC*GUUG*CCAAU*AAGAACUAAUG
- Length
- 36 nucleotides
- Bulged bases
- 8XT1|1|L1|A|199, 8XT1|1|L1|G|622, 8XT1|1|L1|U|629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XT1|1|L1|C|195
8XT1|1|L1|U|196
8XT1|1|L1|A|197
8XT1|1|L1|G|198
8XT1|1|L1|A|199
8XT1|1|L1|A|200
8XT1|1|L1|A|201
8XT1|1|L1|U|202
8XT1|1|L1|A|203
8XT1|1|L1|A|204
8XT1|1|L1|C|205
*
8XT1|1|L1|G|229
8XT1|1|L1|A|230
8XT1|1|L1|C|231
8XT1|1|L1|C|232
8XT1|1|L1|C|233
*
8XT1|1|L1|G|349
8XT1|1|L1|U|350
8XT1|1|L1|U|351
8XT1|1|L1|G|352
*
8XT1|1|L1|C|601
8XT1|1|L1|C|602
8XT1|1|L1|A|603
8XT1|1|L1|A|604
8XT1|1|L1|U|605
*
8XT1|1|L1|A|620
8XT1|1|L1|A|621
8XT1|1|L1|G|622
8XT1|1|L1|A|623
8XT1|1|L1|A|624
8XT1|1|L1|C|625
8XT1|1|L1|U|626
8XT1|1|L1|A|627
8XT1|1|L1|A|628
8XT1|1|L1|U|629
8XT1|1|L1|G|630
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL4m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Li
- Large ribosomal subunit protein bL35m
- Chain Lq
- Large ribosomal subunit protein mL43
- Chain Lr
- Large ribosomal subunit protein mL44
- Chain Lw
- Large ribosomal subunit protein mL49
- Chain Ly
- Large ribosomal subunit protein mL51
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