J5_8XT1_005
3D structure
- PDB id
- 8XT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUUU
- Length
- 35 nucleotides
- Bulged bases
- 8XT1|1|L1|A|1055, 8XT1|1|L1|A|1265, 8XT1|1|L1|G|1322, 8XT1|1|L1|U|1402, 8XT1|1|L1|U|1426, 8XT1|1|L1|U|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XT1|1|L1|A|1050
8XT1|1|L1|G|1051
8XT1|1|L1|A|1052
8XT1|1|L1|A|1053
8XT1|1|L1|G|1054
8XT1|1|L1|A|1055
8XT1|1|L1|C|1056
8XT1|1|L1|C|1057
*
8XT1|1|L1|G|1263
8XT1|1|L1|G|1264
8XT1|1|L1|A|1265
8XT1|1|L1|U|1266
8XT1|1|L1|A|1267
8XT1|1|L1|A|1268
8XT1|1|L1|C|1269
8XT1|1|L1|A|1270
*
8XT1|1|L1|U|1317
8XT1|1|L1|C|1318
8XT1|1|L1|G|1319
8XT1|1|L1|A|1320
8XT1|1|L1|U|1321
8XT1|1|L1|G|1322
8XT1|1|L1|U|1323
*
8XT1|1|L1|G|1400
8XT1|1|L1|U|1401
8XT1|1|L1|U|1402
8XT1|1|L1|C|1403
8XT1|1|L1|A|1404
8XT1|1|L1|G|1405
*
8XT1|1|L1|C|1423
8XT1|1|L1|G|1424
8XT1|1|L1|G|1425
8XT1|1|L1|U|1426
8XT1|1|L1|U|1427
8XT1|1|L1|U|1428
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LD
- Large ribosomal subunit protein uL4m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain LP
- Large ribosomal subunit protein uL16m
- Chain LV
- 39S ribosomal protein L22, mitochondrial
- Chain Lf
- Large ribosomal subunit protein bL32m
Coloring options: