Loop J5_8XU8

3D structure

PDB id: 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description: State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAU*AUG*CGAAU*AUGGUU
Length: 46 nucleotides
Bulged bases: 8XU8|1|2|U|132, 8XU8|1|2|U|134, 8XU8|1|2|A|140, 8XU8|1|2|U|141, 8XU8|1|2|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8XU8|1|2|A|124
8XU8|1|2|U|125
8XU8|1|2|A|126
8XU8|1|2|G|127
8XU8|1|2|U|128
8XU8|1|2|U|129
8XU8|1|2|C|130
8XU8|1|2|C|131
8XU8|1|2|U|132
8XU8|1|2|U|133
8XU8|1|2|U|134
8XU8|1|2|A|135
8XU8|1|2|C|136
8XU8|1|2|U|137
8XU8|1|2|A|138
8XU8|1|2|C|139
8XU8|1|2|A|140
8XU8|1|2|U|141
8XU8|1|2|G|142
8XU8|1|2|G|143
*
8XU8|1|2|C|172
8XU8|1|2|A|173
8XU8|1|2|U|174
8XU8|1|2|G|175
8XU8|1|2|C|176
8XU8|1|2|U|177
8XU8|1|2|U|178
8XU8|1|2|A|179
8XU8|1|2|A|180
8XU8|1|2|A|181
8XU8|1|2|A|182
8XU8|1|2|U|183
*
8XU8|1|2|A|202
8XU8|1|2|U|203
8XU8|1|2|G|204
*
8XU8|1|2|C|263
8XU8|1|2|G|264
8XU8|1|2|A|265
8XU8|1|2|A|266
8XU8|1|2|U|267
*
8XU8|1|2|A|288
8XU8|1|2|U|289
8XU8|1|2|G|290
8XU8|1|2|G|291
8XU8|1|2|U|292
8XU8|1|2|U|293

Current chains

Chain 2: 18S rRNA

Nearby chains

Chain SS: Small ribosomal subunit protein eS4A
Chain ST: Small ribosomal subunit protein eS6A
Chain SV: Small ribosomal subunit protein eS8A

J5_8XU8_004