J5_8XU8_005

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUUUGG*CUUUCCUU*GACUUU*AUAGAAUAGGACGUUUGGUUC*GGACCAUCGUAAUGAU

Length

58 nucleotides

Bulged bases

8XU8|1|2|U|639, 8XU8|1|2|U|694, 8XU8|1|2|C|696, 8XU8|1|2|C|697, 8XU8|1|2|U|813, 8XU8|1|2|G|815, 8XU8|1|2|U|820, 8XU8|1|2|C|849, 8XU8|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|2|A|636
8XU8|1|2|C|637
8XU8|1|2|U|638
8XU8|1|2|U|639
8XU8|1|2|U|640
8XU8|1|2|G|641
8XU8|1|2|G|642
*
8XU8|1|2|C|692
8XU8|1|2|U|693
8XU8|1|2|U|694
8XU8|1|2|U|695
8XU8|1|2|C|696
8XU8|1|2|C|697
8XU8|1|2|U|698
8XU8|1|2|U|699
*
8XU8|1|2|G|739
8XU8|1|2|A|740
8XU8|1|2|C|741
8XU8|1|2|U|742
8XU8|1|2|U|743
8XU8|1|2|U|744
*
8XU8|1|2|A|807
8XU8|1|2|U|808
8XU8|1|2|A|809
8XU8|1|2|G|810
8XU8|1|2|A|811
8XU8|1|2|A|812
8XU8|1|2|U|813
8XU8|1|2|A|814
8XU8|1|2|G|815
8XU8|1|2|G|816
8XU8|1|2|A|817
8XU8|1|2|C|818
8XU8|1|2|G|819
8XU8|1|2|U|820
8XU8|1|2|U|821
8XU8|1|2|U|822
8XU8|1|2|G|823
8XU8|1|2|G|824
8XU8|1|2|U|825
8XU8|1|2|U|826
8XU8|1|2|C|827
*
8XU8|1|2|G|845
8XU8|1|2|G|846
8XU8|1|2|A|847
8XU8|1|2|C|848
8XU8|1|2|C|849
8XU8|1|2|A|850
8XU8|1|2|U|851
8XU8|1|2|C|852
8XU8|1|2|G|853
8XU8|1|2|U|854
8XU8|1|2|A|855
8XU8|1|2|A|856
8XU8|1|2|U|857
8XU8|1|2|G|858
8XU8|1|2|A|859
8XU8|1|2|U|860

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SU

Small ribosomal subunit protein eS7A

Chain SX

Small ribosomal subunit protein uS17A

Chain SY

Small ribosomal subunit protein uS15

Chain Sb

Small ribosomal subunit protein uS8A

Chain T

Large ribosomal subunit protein eL19A