J5_8XXL_001
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XXL|1|S2|C|30
8XXL|1|S2|U|31
8XXL|1|S2|U|32
8XXL|1|S2|G|33
8XXL|1|S2|U|34
*
8XXL|1|S2|A|521
8XXL|1|S2|A|522
8XXL|1|S2|A|523
8XXL|1|S2|U|524
8XXL|1|S2|A|525
8XXL|1|S2|A|526
8XXL|1|S2|C|527
*
8XXL|1|S2|G|558
8XXL|1|S2|G|559
8XXL|1|S2|A|560
8XXL|1|S2|A|561
8XXL|1|S2|U|562
8XXL|1|S2|G|563
8XXL|1|S2|A|564
8XXL|1|S2|G|565
*
8XXL|1|S2|C|585
8XXL|1|S2|G|586
8XXL|1|S2|A|587
8XXL|1|S2|G|588
8XXL|1|S2|G|589
8XXL|1|S2|A|590
8XXL|1|S2|U|591
8XXL|1|S2|C|592
8XXL|1|S2|C|593
8XXL|1|S2|A|594
8XXL|1|S2|U|595
*
8XXL|1|S2|A|641
8XXL|1|S2|U|642
8XXL|1|S2|A|643
8XXL|1|S2|G|644
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
Coloring options: