J5_8XXM_003

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGCUC*GGG*UG*CCG*CGA

Length

17 nucleotides

Bulged bases

8XXM|1|S2|G|126, 8XXM|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXM|1|S2|U|124
8XXM|1|S2|C|125
8XXM|1|S2|G|126
8XXM|1|S2|C|127
8XXM|1|S2|U|128
8XXM|1|S2|C|129
*
8XXM|1|S2|G|183
8XXM|1|S2|G|184
8XXM|1|S2|G|185
*
8XXM|1|S2|U|214
8XXM|1|S2|G|215
*
8XXM|1|S2|C|310
8XXM|1|S2|C|311
8XXM|1|S2|G|312
*
8XXM|1|S2|C|337
8XXM|1|S2|G|338
8XXM|1|S2|A|339

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8