J5_8XZ3_001

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8XZ3|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8XZ3_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1061

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8XZ3|1|A|C|44
8XZ3|1|A|G|45
8XZ3|1|A|A|46
8XZ3|1|A|U|47
8XZ3|1|A|G|48
8XZ3|1|A|A|49
8XZ3|1|A|A|50
8XZ3|1|A|G|51
*
8XZ3|1|A|C|113
8XZ3|1|A|G|114
8XZ3|1|A|A|115
8XZ3|1|A|A|116
8XZ3|1|A|U|117
8XZ3|1|A|G|118
*
8XZ3|1|A|C|127
8XZ3|1|A|G|128
*
8XZ3|1|A|C|147
8XZ3|1|A|A|148
8XZ3|1|A|C|149
*
8XZ3|1|A|G|175
8XZ3|1|A|G|176
8XZ3|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain d

Large ribosomal subunit protein bL34