J5_8Y0U_002
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8Y0U|1|C1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Y0U_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1027
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8Y0U|1|C1|G|658
8Y0U|1|C1|G|659
8Y0U|1|C1|A|660
8Y0U|1|C1|G|661
8Y0U|1|C1|U|662
8Y0U|1|C1|C|663
*
8Y0U|1|C1|G|799
8Y0U|1|C1|G|800
8Y0U|1|C1|A|801
8Y0U|1|C1|C|802
*
8Y0U|1|C1|G|941
8Y0U|1|C1|U|942
8Y0U|1|C1|U|943
8Y0U|1|C1|C|944
*
8Y0U|1|C1|G|1375
8Y0U|1|C1|C|1376
*
8Y0U|1|C1|G|1431
8Y0U|1|C1|C|1432
8Y0U|1|C1|A|1433
8Y0U|1|C1|G|1434
8Y0U|1|C1|A|1435
8Y0U|1|C1|U|1436
8Y0U|1|C1|C|1437
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Le
- Large ribosomal subunit protein eL32
Coloring options: