J5_8Y0U_005

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

8Y0U|1|C1|A|2404, 8Y0U|1|C1|A|2817, 8Y0U|1|C1|U|2818, 8Y0U|1|C1|U|2873, 8Y0U|1|C1|G|2874, 8Y0U|1|C1|U|2875, 8Y0U|1|C1|U|2978, 8Y0U|1|C1|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0U|1|C1|A|2399
8Y0U|1|C1|G|2400
8Y0U|1|C1|A|2401
8Y0U|1|C1|A|2402
8Y0U|1|C1|G|2403
8Y0U|1|C1|A|2404
8Y0U|1|C1|C|2405
8Y0U|1|C1|C|2406
*
8Y0U|1|C1|G|2815
8Y0U|1|C1|G|2816
8Y0U|1|C1|A|2817
8Y0U|1|C1|U|2818
8Y0U|1|C1|A|2819
8Y0U|1|C1|A|2820
8Y0U|1|C1|C|2821
8Y0U|1|C1|U|2822
8Y0U|1|C1|G|2823
*
8Y0U|1|C1|C|2867
8Y0U|1|C1|U|2868
8Y0U|1|C1|U|2869
8Y0U|1|C1|C|2870
8Y0U|1|C1|G|2871
8Y0U|1|C1|A|2872
8Y0U|1|C1|U|2873
8Y0U|1|C1|G|2874
8Y0U|1|C1|U|2875
8Y0U|1|C1|C|2876
*
8Y0U|1|C1|G|2951
8Y0U|1|C1|G|2952
8Y0U|1|C1|U|2953
8Y0U|1|C1|U|2954
8Y0U|1|C1|U|2955
8Y0U|1|C1|A|2956
8Y0U|1|C1|G|2957
*
8Y0U|1|C1|U|2975
8Y0U|1|C1|A|2976
8Y0U|1|C1|G|2977
8Y0U|1|C1|U|2978
8Y0U|1|C1|U|2979
8Y0U|1|C1|U|2980

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LB

Large ribosomal subunit protein uL3

Chain LC

Large ribosomal subunit protein uL4A

Chain LI

Large ribosomal subunit protein uL16

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29